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Workshop: Analysing and Visualizing Data with R and Galaxy
18-20 May 2020, Online
Summary
Workshop is focused on using tools such as Galaxy and R Studio to analyze and visualize NGS data. It consists of three parts and includes:
Day 1: Introduction to the web-based platform Galaxy. Lecturer Dr. Vesselin Baev
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11.00-12.00 Introduction to Galaxy (online)
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12.00-13.00 Visualization of RNA-Seq results with Volcano Plot (hands-on)
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13.00-13.30 Online support
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13.30-15.00 Visualization of RNA-Seq results with heatmap (hands-on)
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15.00-15.30 Online support
Day 2: RStudio and R graphics system. Lecturer Dr. Zdravka Ivanova
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11.00-11.30 Introduction to RStudio Cloud and R graphics system (online)
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11.30-13.00 Getting started with RStudio Cloud and working with traditional R base plots.
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13.00-13.30 Online support
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13.30-15.00 Working with lattice and ggplot2 R packages. R modeling (hands-on)
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15.00-15.30. Online support
Day 3: Introduction machine learning. Lecturer Dr. George Minkov
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11.00-11.30 Introduction machine learning (online)
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12.00-13.30 Basics of machine learning (hands-on)
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13.00-13.30 Online support
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14.00-15.00 Introduction to deep learning (hands-on)
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15.00-15.30 Online support
Acknowledgements
This workshop is supported by funding from project PlantaSYST, as well as the IMBB Plovdiv.
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Dr. Vesselin Baev, The Institute of Molecular Biology and Biotechnology (IMBB, University of Plovdiv), Plovdiv, Bulgaria.
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Dr. George Minkov, The Institute of Molecular Biology and Biotechnology (IMBB, University of Plovdiv), Plovdiv, Bulgaria.
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Dr. Zdravka Ivanova, The Institute of Molecular Biology and Biotechnology (IMBB, University of Plovdiv), Plovdiv, Bulgaria.
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