Publications 2022 - PlantaSYST

Ahouvi Y., Haber Z., Zach Y.Y., Rosental L., Toubiana D., Sharma D., Alseekh S., Tajima H., Fernie A.R., Brotman Y., Blumwald E., Sade N. (2022) The alteration of tomato chloroplast vesiculation positively affects whole-plant source-sink relations and fruit metabolism under stress conditions. Plant Cell Physiology. DOI:doi.org/10.1093/pcp/pcac133. (IF 4.927)

Amanda D., Frey F.P., Neumann U., Przybyl M., Šimura J., Zhang Y., Chen Z., Gallavotti A., Fernie A.R., Ljung K., Acosta I.F. (2022) Auxin boosts energy generation pathways to fuel pollen maturation in barley. Current Biology. DOI: doi: 10.1016/j.cub.2022.02.073. (IF 10.834)

Alshareef N.O., Otterbach S.L., Allu A.D., Woo Y.H., de Werk T., Kamranfar I., Mueller-Roeber B., Tester M, Balazadeh S., Schmöckel S.M. (2022) NAC transcription factors ATAF1 and ANAC055 affect the heat stress response in Arabidopsis. Scientific Reports. 12(1):11264. (IF 4.996)

Ayatollahi Z., Kazanaviciute V., Shubchynskyy V., Kvederaviciute K., Schwanninger M., Rozhon W., Stumpe M., Mauch F., Bartels S., Ulm R., Balazadeh S., Mueller-Roeber B, Meskiene I., Schweighofer A. (2022) Dual control of MAPK activities by AP2C1 and MKP1 MAPK phosphatases regulates defence responses in arabidopsis. Journal of Experimental Botany. 73(8): 2369–2384. (IF 7.298)

Bovdilova. A., Alexandre B.M., Höppner. A., Luís I.M., AlvarezC.E., Bickel D., Gohlke H., Decker C., Nagel-Steger L., Alseekh S., Fernie A.R., DrincovichM.F., Abreu I.A., Maurino V.G. (2022) Corrigendum to: posttranslational modification of the NADP-malic enzyme Involved in C4 photosynthesis modulates the enzymatic activity during the day. The Plant Cell. 34:(1) 698-699. (11.277)

Chen C., Liu F., Zhang K., Niu X., Zhao H., Liu Q., Georgiev M.I., Xu X., Zhang X., Zhou M. (2022) MeJA-responsive bHLH transcription factor LjbHLH7 regulates cyanogenic glucoside biosynthesis in lotus japonicus. Journal of Experimental Botany. 73(8): 2650-2665. (IF 7.298)

Ding M., He Y., Zhang K., Li J., Shi Y., Zhao M., Meng Y., Georgiev M.I., Zhou M. (2022) JA-induced FtBPM3 accumulation promotes FtERF-EAR3 degradation and rutin biosynthesis in Tartary buckwheat. Plant Journal. 112(2): 323-334. (IF 7.091)

Fernie A.R., Alseekh S. (2022) Metabolomic selection-based machine learning improves fruit taste prediction. Proceedings of the National Academy of Sciences of the United States of America. DOI: doi: 10.1073/pnas.2201078119. (IF 12.779)

Fernie A.R., Zhang Y. (2022) The Bacillus subtilis glutamate anti-metabolon. Nature Metabolism. DOI: 10.1038/s42255-022-00534-8. (IF 19.865)

Gechev T., Petrov V. (2022) Plant systems biology in 2022 and beyond. International Journal of Molecular Sciences. 23: 415. (IF 6.208)

He M., He Y., Zhang K., Lu X., Zhang X., Gao B., Fan Y., Zhao H., Jha R., Huda M.N., Tang Y., Wang J., Yang W., Yan M., Cheng J., Ruan J., Dulloo E., Zhang Z., Georgiev M.I., Chapman M., Zhou M. (2022) Comparison of buckwheat genomes reveals the genetic basis of metabolomic divergence and ecotype differentiation. New Phytologist. 235(5): 1927-1943. (IF 10.151)

Huda, M. N., Li, X., Jahan, T., He, Y., Guan, C., Zhang K., Gao A., Georgiev M.I., Zhou M. (2022)Acceleration of the genetic gain for nutraceutical improvement of adlay (Coix L.) through genomic approaches: current status and future prospects. Food Reviews International. DOI: 10.1080/87559129.2022.2067175. (IF 6.478)

Hussain T., Shoaib M., Shah B., Ali A., Ullah A., Alenezi F., Gechev T., Farman Ali F., Syed I. (2022) Deep learning-based model for plant lesion segmentation, subtype identification, and survival probability estimation. Frontiers in Plant Science. 13: 1095547. (IF 6.627)

Ishihara H., Alseekh S., Feil R., Perera P., George G.M., Niedźwiecki P., Arrivault S., Zeeman S.C., Fernie A.R., Lunn J.E., Smith A.M., Stitt M. (2022) Rising rates of starch degradation during daytime and trehalose 6-phosphate optimize carbon availability. Plant Physiology. 189(4): 1976–2000. (IF 8.005)

Ivanova Z., Minkov G., Gisel A., Yahubyan G., Minkov I., Toneva V., Baev V. (2022) The multiverse of plant small RNAs: How can we explore It? International Journal of Molecular Sciences. 23(7): 3979 (IF 6.208)

Jung J-W., Zahmanova G., Minkov I., Lomonossoff G.P. (2022) Plant-based expression and characterization of SARS-CoV-2 virus-like particles presenting a native spike protein. Plant Biotechnolgy Journal. DOI: doi: 10.1111/pbi.13813. (IF 13.263)

Koschmieder J., Alseekh S, Shabani M., Baltenweck R., Maurino V.G., Palme K., Fernie A.R., Hugueney P., Welsch R. (2022) Color recycling: metabolization of apocarotenoid degradation products suggests carbon regeneration via primary metabolic pathways. Plant Cell Reports. DOI: doi: 10.1007/s00299-022-02831-8. (IF 4.964)

Liu J., Wang Y., Wu J., Georgiev M.I., Xu B., Wong K.H., Bai W., Tian L. (2022) Isolation, structural properties, and bioactivities of polysaccharides from mushrooms termitomyces: a review. Journal of Agricultural and Food Chemistry. 70(1): 21-33. (IF 5.274)

Marchev A.S, Amirova K., Georgiev M.I. (2022) Genetic engineering of cell cultures for enhanced production of nutraceuticals. In T. Belwal, M.I. Georgiev, & J.M. Al-Khayri (Eds.). Nutraceuticals Production from Plant Cell Factory. (pp. 395-415). Springer, Singapore.

Martínez-Rivas F.J., Blanco-Portales R., Molina-Hidalgo F.J., Caballero J.L., Perez de Souza L., Alseekh S., Fernie A.R., Muñoz-Blanco J., Rodríguez-Franco A. (2022) Azacytidine arrests ripening in cultivated strawberry (fragaria × ananassa) by repressing key genes and altering hormone contents. BMC Plant Biology. 22(1): 278. (IF 5.26)

Martínez-Rivas F.J., Blanco-Portales R., Moyano E., Alseekh S., Caballero J.L., Schwab W., Fernie A.R., Muñoz-Blanco J., Molina-Hidalgo F.J. (2022) Strawberry fruit FanCXE1 carboxylesterase is involved in the catabolism of volatile esters during the ripening process. Horticulture Research. 9: uhac095 (IF 7.291)

Mladenova S.G., Savova M.S., Marchev A.S., Ferrante C., Orlando G., Wabitsch M., Georgiev M.I. (2022) Anti-adipogenic activity of maackiain and ononin is mediated via inhibition of PPARγ in human adipocytes. Biomedicine and Pharmacotherapy. 149: 112908. (IF 6.529)

Perra M., Fancello L., Castangia I., Allaw M., Escribano-Ferrer E., Peris J.E., Usach I., Manca M.L., Koycheva I.K., Georgiev M.I., Manconi M. (2022) Formulation and testing of antioxidant and protective effect of hyalurosomes loading extract rich in rosmarinic acid biotechnologically produced from Lavandula angustifolia Miller. Molecules. 27(8): 2423. (IF 6.064)

Rocchetti. L., Gioia. T., Logozzo. G., Brezeanu. C., Pereira L.G., la Rosa L., Marzario S., Pieri A., Fernie A.R., Alseekh S., Susek K., Cook D.R., Varshney R.K., Agrawal S.K., Hamwieh A., Bitocchi, E., Papa R. (2022) Towards the development, maintenance and standardized phenotypic characterization of single-seed-descent genetic resources for chickpea. Current protocols. DOI: https://doi.org/10.1002/cpz1.371

Powell A.F., Feder A., Li J., Schmidt M.H., Courtney L., Alseekh S., Jobson E.M, Vogel A., Xu Y, Lyon D., Dumschott K., McHale M., Sulpice R., Bao K., Lal R., Duhan A., Hallab A., Denton A.K., Bolger M.E., Fernie A.R., Hind S.R., Mueller L.A., Martin G.B., Fei Z., Martin C., Giovannoni J.J., Strickler S.R., Usadel B. (2022) A Solanum lycopersicoides reference genome facilitates insights into tomato specialized metabolism and immunity. The Plant Journal. 110(6):1791-1810. (IF 7.091)

Sageman-Furnas K., Nurmi M., Contag M., Plötner B., Alseekh S., Wiszniewski A., Fernie A.R, Smith L.M., Laitinen RAE. (2022) A. thaliana hybrids develop growth abnormalities through integration of stress, hormone and growth signalling. Plant Cell Physiology. 63(7): 944-954. (IF 4.927)

Salem M.A., Aborehab N.M., Al-Karmalawy A.A., Fernie A.R., Alseekh S., Ezzat S.M. (2022) Potential valorization of edible nuts by-products: exploring the immune-modulatory and antioxidants effects of selected nut shells extracts in relation to their metabolic profiles. Antioxidants. 11(3): 462. (IF 7.675)

Salem M.A., El-Shiekh R.A, Aborehab N.M., Al-Karmalawy A.A., Ezzat S.M., Alseekh S., Fernie A.R. (2022) Metabolomics driven analysis of Nigella sativa seeds identifies the impact of roasting on the chemical composition and immunomodulatory activity. Food Chemistry. DOI: 10.1016/j.foodchem.2022.133906. (IF 9.231)

Salem M.A., El-Shiekh R.A., Fernie A.R., Alseekh S., Zayed A. (2022) Metabolomics-based profiling for quality assessment and revealing the impact of drying of turmeric (Curcuma longa L.). Scientific Report. 12(1): 10288. (IF 4.996)

Salem M.A, Ezzat S.M, Ahmed K.A, Alseekh S., Fernie A.R, Essam R.M. (2022) A comparative study of the antihypertensive and cardioprotective potentials of hot and cold aqueous extracts of Hibiscus sabdariffa L. in relation to their metabolic profiles. Frontiers in Pharmacology. DOI: doi: 10.3389/fphar.2022.840478. (IF 5.988)

Savova M.S., Todorova M.N., Apostolov A.G., Yahubyan G.T., Georgiev M.I. (2022) Betulinic acid counteracts the lipid accumulation in Caenorhabditis elegans by modulation of nhr-49 expression. Biomedicine and Pharmacotherapy. Biomedicine and Pharmacotherapy. 156: 113862 (IF 7.419)

Sedaghatmehr M., Stüwe B., Mueller-Roeber B., Balazadeh S. (2022) Heat shock factor HSFA2 fine-tunes resetting of thermomemory via plastidic metalloprotease FtsH6. Journal of Experimental Botany. DOI: doi: 10.1093/jxb/erac257. (IF 7.298)

Sieniawska E., Georgiev M.I. (2022) Metabolomics: towards acceleration of antibacterial plant-based leads discovery. Phytochemistry Reviews. 21: 765-781. (IF 7.741)

Sujeeth N., Petrov V., Guinan K.J., Rasul F., O’Sullivan J., Gechev T. (2022) Current insights into the molecular mode of action of seaweed-based biostimulants and the sustainability of seaweeds as raw material resources. International Journal of Molecular Sciences. 23(14): 7654. (IF 6.208)

Radeva-Ivanova V., Pasev G., Lyall R., Angelov M., Nankar A.N., Kostova D. (2022) First report of cucurbit aphid-borne yellows virus causing yellowing disease on pumpkin (cucurbita pepo) and cucumber (cucumis sativus) in Bulgaria. APS Journal. 106(9): 0191-2917. (IF 3.603)

Rane R.N., Tapase S., Kanojia A., Watharkar A., Salama E., Jang M., Yadav K., Amin A.M., Pinto M.S., Cabral-Pinto, Jadhav P.J., Byong-Hun J. (2022) Molecular insights into plant–microbe interactions for sustainable remediation of contaminated environment. Bioresource Technology. 344(B): 126246. (IF 11.889)

Simeoni F., Skirycz A., Simoni L., Castorina G., De Souza L.P., Fernie A.R., Alseekh S., Giavalisco P., Conti L., Tonelli C., Galbiati M. (2022) The AtMYB60 transcription factor regulates stomatal opening by modulating oxylipin synthesis in guard cells. Scientific Report. DOI: doi: 10.1038/s41598-021-04433-y. (IF 4.996)

Stefan T., Wu X.N., Zhang Y., Fernie A.R., Schulze W.X. (2022) Regulatory Modules of Metabolites and Protein Phosphorylation in Arabidopsis Genotypes With Altered Sucrose Allocation. Frontiers in Plant Science. DOI: doi: 10.3389/fpls.2022.891405. (IF 6.627)

Tabatabaei I., Alseekh S., Shahid M., Leniak E., Wagner M., Mahmoudi H., Thushar S., Fernie A.R., Murphy K.M., Schmockel S.M., Tester M., Mueller-Roeber B., Skirycz A., Balazadeh S. (2022) The diversity of quinoa morphological traits and seed metabolic composition. Scientific Data. DOI: 10.1038/s41597-022-01399-y. (IF 8.501)

Timm S., Klaas N., Niemann J., Jahnke K., Alseekh S., Zhang Y., Souza P. V., Hou L.-Y., Geigenberger P., Daloso D. M. (2022) Simultaneous adjustments of major mitochondrial pathways through redox regulation of dihydrolipoamide dehydrogenase (mtLPD1). bioRxiv. doi: https://doi.org/10.1101/2022.04.02.486831

Todorova V., Ivanova S., Georgieva Y., Nalbantova V., Karcheva-Bahchevanska D., Benbassat N., Savova M.S., Georgiev M.I., Ivanov K. (2022) Chemical composition and histochemical localization of essential oil from wild and cultivated rhaponticum carthamoides roots and rhizomes. Plants. 11(15): 2061. (IF 4.658)

Tong H., Nankar A.N., Liu J., Todorova V., Ganeva D., Grozeva S., Tringovska I., Pasev Gancho., Radeva-Ivanova V., Gechev T., Kostova D., Nikoloski Z. (2022) Genomic prediction of morphometric and colorimetric traits in Solanaceous fruits. Horticulture Research. DOI: https://doi.org/10.1093/hr/uhac072 (IF 7.291)

Zahmanova G., Takova K., Valkova R., Toneva V., Minkov I., Andonov A., Lukov G.L. (2022) Plant-derived recombinant vaccines against zoonotic viruses. Life. 12(2): 156. (IF 3.251)

Zareen S., Ali A., Lim C.J., Khan H.A., Park J., Xu Z.Y., Yun D.J. (2022) The transcriptional corepressor HOS15 mediates dark-Induced leaf senescence in arabidopsis. Frontiers in Plant Science. DOI: doi: 10.3389/fpls.2022.828264. (IF 6.627)

Zhao H., He Y., Zhang K., Li S., Chen Y., He M., He F., Gao B., Yang D., Fan Y., Zhu X., Yan M., Giglioli-Guivarc’h N., Hano C., Fernie A.R., Georgiev M.I., Janovska D., Meglic V., Zhou M. (2022) Rewiring of the seed metabolome during Tartary buckwheat domestication. Plant Biotechnology Journal. DOI: doi.org/10.1111/pbi.13932 (IF 13.263)

Zhou J., Liu C., Chen Q., Liu L., Niu S., Chen R., Li K., Sun Y., Shi Y., Yang C., Shen S., Li Y., Xing J,. Yuan H., Liu X., Fang C., Fernie A.R., Luo J. (2022) Integration of rhythmic metabolome and transcriptome provides insights into the transmission of rhythmic fluctuations and temporal diversity of metabolism in rice. Science China Life Sciences. DOI: doi: 10.1007/s11427-021-2064-7. (IF 10.372)

Zhou W., Georgiev M.I., Liao P. (2022) Editorial: Discovery, biosynthesis, regulation, transport, release and engineering of plant natural products. Frontiers in Plant Science. 13:1017808. (IF 6.627)

Zhang Y., Fernie A.R. (2022) Dynamically regulating metabolic fluxes with synthetic metabolons. Trends Biotechnology. DOI: doi: 10.1016/j.tibtech.2022.06.005. (IF 21.942)

Zhu F., Alseekh S., Wen W., Cheng Y., Fernie A.R. (2022) Genome-wide association studies of arabidopsis dark-induced senescence reveals signatures of autophagy in metabolic reprogramming. Autophagy. 18: 457-458. (IF 13.391)

Zhu F., Alseekh S., Koper K., Tong H., Nikoloski Z., Naake T., Liu H., Yan J., Brotman Y., Wen W., Maeda H., Cheng Y., Fernie A.R. (2022) Genome-wide association of the metabolic shifts underpinning dark-induced senescence in Arabidopsis. The Plant Cell. 34(1): 557-578. (IF 11.277)

Zhu F., Ahchige M.W., Brotman Y., Alseekh S., Zsogon A., Fernie A.R. (2022) Bringing more players into play: leveraging stress in genome wide association studies. Journal of Plant Physiology. 271: 153657. (IF 3.686)

Zhu F., Jadhav S.S., Tohge T., Salem M.A., Li J.M., Giovannoni J.J., Cheng Y., Alseekh S., Fernie A.R. (2022) A comparative transcriptomics and eQTL approach identifies SlWD40 as a tomato fruit ripening regulator. Plant Physiology. DOI: doi: 10.1093/plphys/kiac200. (IF 8.005)

Fernie A.R., Zhang Y. (2022) The Bacillus subtilis glutamate anti-metabolon. Nature Metabolism. DOI: 10.1038/s42255-022-00534-8. (IF 19.865)

Gechev T., Petrov V. (2022) Plant systems biology in 2022 and beyond. International Journal of Molecular Sciences. 23: 415. (IF 6.208)

Sieniawska E., Georgiev M.I. (2022) Metabolomics: towards acceleration of antibacterial plant-based leads discovery. Phytochemistry Reviews. 21: 765-781. (IF 7.741)

Zahmanova G., Takova K., Valkova R., Toneva V., Minkov I., Andonov A., Lukov G.L. (2022) Plant-derived recombinant vaccines against zoonotic viruses. Life. 12(2): 156. (IF 3.251)

Zhang Y., Fernie A.R. (2022) Dynamically regulating metabolic fluxes with synthetic metabolons. Trends Biotechnology. DOI: doi: 10.1016/j.tibtech.2022.06.005. (IF 21.942)